HL_8PVA_029

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PVA|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_029 not in the Motif Atlas

Geometric match to HL_6QN3_003

Geometric discrepancy: 0.1241

The information below is about HL_6QN3_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8PVA|1|A|C|1449
8PVA|1|A|U|1450
8PVA|1|A|U|1451
8PVA|1|A|C|1452
8PVA|1|A|G|1453
8PVA|1|A|G|1454

Current chains

Chain A

16S rRNA

Nearby chains