HL_8PVA_040

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8PVA|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_040 not in the Motif Atlas

Geometric match to HL_4PDB_001

Geometric discrepancy: 0.2392

The information below is about HL_4PDB_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8PVA|1|a|U|137
8PVA|1|a|U|138
8PVA|1|a|U|139
8PVA|1|a|C|140
8PVA|1|a|G|141
8PVA|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23