HL_8PVA_047

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8PVA|1|a|G|329, 8PVA|1|a|A|330, 8PVA|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_047 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8PVA|1|a|G|327
8PVA|1|a|U|328
8PVA|1|a|G|329
8PVA|1|a|A|330
8PVA|1|a|C|331
8PVA|1|a|A|332
8PVA|1|a|G|333
8PVA|1|a|C|334
8PVA|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24