HL_8PVA_061

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_061 not in the Motif Atlas

Geometric match to HL_5TBW_075

Geometric discrepancy: 0.2585

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8PVA|1|a|C|885
8PVA|1|a|A|886
8PVA|1|a|U|887
8PVA|1|a|C|888
8PVA|1|a|C|889
8PVA|1|a|C|890
8PVA|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13