HL_8PVA_078

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8PVA|1|a|A|1780, 8PVA|1|a|U|1781, 8PVA|1|a|U|1782, 8PVA|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_078 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.0517

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8PVA|1|a|U|1777
8PVA|1|a|U|1778
8PVA|1|a|U|1779
8PVA|1|a|A|1780
8PVA|1|a|U|1781
8PVA|1|a|U|1782
8PVA|1|a|A|1783
8PVA|1|a|A|1784
8PVA|1|a|A|1785
8PVA|1|a|A|1786
8PVA|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

Large ribosomal subunit protein uL2