HL_8PVA_087

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8PVA|1|a|A|2268, 8PVA|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_087 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.0457

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8PVA|1|a|C|2264
8PVA|1|a|U|2265
8PVA|1|a|A|2266
8PVA|1|a|A|2267
8PVA|1|a|A|2268
8PVA|1|a|G|2269
8PVA|1|a|A|2270
8PVA|1|a|G|2271
8PVA|1|a|U|2272
8PVA|1|a|A|2273
8PVA|1|a|A|2274
8PVA|1|a|C|2275
8PVA|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16

Chain v

50S ribosomal protein L27