HL_8PVA_092

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8PVA|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_092 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.0546

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8PVA|1|a|U|2404
8PVA|1|a|G|2405
8PVA|1|a|A|2406
8PVA|1|a|A|2407
8PVA|1|a|U|2408
8PVA|1|a|G|2409
8PVA|1|a|G|2410
8PVA|1|a|A|2411
8PVA|1|a|A|2412
8PVA|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15