HL_8PVA_099

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8PVA|1|a|G|2751, 8PVA|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVA_099 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0603

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8PVA|1|a|C|2745
8PVA|1|a|U|2746
8PVA|1|a|G|2747
8PVA|1|a|A|2748
8PVA|1|a|A|2749
8PVA|1|a|A|2750
8PVA|1|a|G|2751
8PVA|1|a|C|2752
8PVA|1|a|A|2753
8PVA|1|a|U|2754
8PVA|1|a|C|2755
8PVA|1|a|U|2756
8PVA|1|a|A|2757
8PVA|1|a|A|2758
8PVA|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13