HL_8PVK_004

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PVK|1|C1|U|132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_004 not in the Motif Atlas

Geometric match to HL_2HW8_001

Geometric discrepancy: 0.0928

The information below is about HL_2HW8_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8PVK|1|C1|C|130
8PVK|1|C1|U|131
8PVK|1|C1|U|132
8PVK|1|C1|C|133
8PVK|1|C1|G|134
8PVK|1|C1|G|135

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8

Chain LX

60S ribosomal protein L25-like protein

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase