HL_8PVK_025

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUAACUG

Length

8 nucleotides

Bulged bases

8PVK|1|C1|C|1064

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_025 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.2308

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8PVK|1|C1|C|1059
8PVK|1|C1|U|1060
8PVK|1|C1|U|1061
8PVK|1|C1|A|1062
8PVK|1|C1|A|1063
8PVK|1|C1|C|1064
8PVK|1|C1|U|1065
8PVK|1|C1|G|1066

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LT

60S ribosomal protein l21-like protein