HL_8PVK_028
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- C(A2M)UGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 8PVK|1|C1|A|1228
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVK_028 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.2163
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8PVK|1|C1|C|1222
8PVK|1|C1|A2M|1223
8PVK|1|C1|U|1224
8PVK|1|C1|G|1225
8PVK|1|C1|G|1226
8PVK|1|C1|A|1227
8PVK|1|C1|A|1228
8PVK|1|C1|G|1229
8PVK|1|C1|U|1230
8PVK|1|C1|C|1231
8PVK|1|C1|G|1232
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Ch
- Ribosome assembly protein 4
- Chain LK
- 60S ribosomal protein L12-like protein
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