HL_8PVK_033

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AG(OMC)GGUU

Length

7 nucleotides

Bulged bases

8PVK|1|C1|G|1490, 8PVK|1|C1|U|1494

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_033 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2171

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8PVK|1|C1|A|1489
8PVK|1|C1|G|1490
8PVK|1|C1|OMC|1491
8PVK|1|C1|G|1492
8PVK|1|C1|G|1493
8PVK|1|C1|U|1494
8PVK|1|C1|U|1495

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19