HL_8PVK_058

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAG(OMU)G(OMU)G

Length

7 nucleotides

Bulged bases

8PVK|1|C1|G|2687, 8PVK|1|C1|G|2689

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_058 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1225

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PVK|1|C1|C|2685
8PVK|1|C1|A|2686
8PVK|1|C1|G|2687
8PVK|1|C1|OMU|2688
8PVK|1|C1|G|2689
8PVK|1|C1|OMU|2690
8PVK|1|C1|G|2691

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cg

Ribosome biogenesis regulatory protein