HL_8PVK_063

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UU(OMG)UUCA

Length

7 nucleotides

Bulged bases

8PVK|1|C1|U|2882, 8PVK|1|C1|U|2883

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_063 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2427

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8PVK|1|C1|U|2879
8PVK|1|C1|U|2880
8PVK|1|C1|OMG|2881
8PVK|1|C1|U|2882
8PVK|1|C1|U|2883
8PVK|1|C1|C|2884
8PVK|1|C1|A|2885

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain Cd

Nucleolar GTP-binding protein 2

Chain LB

60S ribosomal protein L3-like protein