HL_8PVK_069
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CUCGAAGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVK_069 not in the Motif Atlas
- Geometric match to HL_8C3A_018
- Geometric discrepancy: 0.3891
- The information below is about HL_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84570.1
- Basepair signature
- cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8PVK|1|C1|C|3182
8PVK|1|C1|U|3183
8PVK|1|C1|C|3184
8PVK|1|C1|G|3185
8PVK|1|C1|A|3186
8PVK|1|C1|A|3187
8PVK|1|C1|G|3188
8PVK|1|C1|U|3189
8PVK|1|C1|G|3190
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CO
- DUF2423 domain-containing protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
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