HL_8PVK_081
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- (A2M)CGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8PVK|1|C1|U|861, 8PVK|1|C1|A|865, 8PVK|1|C1|A|866
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVK_081 not in the Motif Atlas
- Homologous match to HL_8P9A_132
- Geometric discrepancy: 0.145
- The information below is about HL_8P9A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8PVK|1|C1|A2M|858
8PVK|1|C1|C|859
8PVK|1|C1|G|860
8PVK|1|C1|U|861
8PVK|1|C1|G|862
8PVK|1|C1|C|863
8PVK|1|C1|A|864
8PVK|1|C1|A|865
8PVK|1|C1|A|866
8PVK|1|C1|U|867
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Lj
- Ribosomal protein L37
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