HL_8PVK_082

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAGAAAGUG

Length

9 nucleotides

Bulged bases

8PVK|1|C1|G|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVK_082 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2357

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

8PVK|1|C1|C|2126
8PVK|1|C1|A|2127
8PVK|1|C1|G|2128
8PVK|1|C1|A|2129
8PVK|1|C1|A|2130
8PVK|1|C1|A|2131
8PVK|1|C1|G|2132
8PVK|1|C1|U|2133
8PVK|1|C1|G|2134

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15