HL_8PVL_023

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8PVL|1|C1|C|943, 8PVL|1|C1|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVL_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2547

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8PVL|1|C1|C|940
8PVL|1|C1|C|941
8PVL|1|C1|U|942
8PVL|1|C1|C|943
8PVL|1|C1|A|944
8PVL|1|C1|G|945

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cg

Ribosome biogenesis regulatory protein