HL_8PVL_033

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

AG(OMC)GGUU

Length

7 nucleotides

Bulged bases

8PVL|1|C1|G|1490, 8PVL|1|C1|U|1494

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVL_033 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2238

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8PVL|1|C1|A|1489
8PVL|1|C1|G|1490
8PVL|1|C1|OMC|1491
8PVL|1|C1|G|1492
8PVL|1|C1|G|1493
8PVL|1|C1|U|1494
8PVL|1|C1|U|1495

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19