HL_8PVL_058

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAG(OMU)G(OMU)G

Length

7 nucleotides

Bulged bases

8PVL|1|C1|G|2687, 8PVL|1|C1|G|2689

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVL_058 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1077

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PVL|1|C1|C|2685
8PVL|1|C1|A|2686
8PVL|1|C1|G|2687
8PVL|1|C1|OMU|2688
8PVL|1|C1|G|2689
8PVL|1|C1|OMU|2690
8PVL|1|C1|G|2691

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain Cd

Nucleolar GTP-binding protein 2

Chain Cg

Ribosome biogenesis regulatory protein