HL_8PVL_060
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CGAAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 8PVL|1|C1|G|2736
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PVL_060 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.0949
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8PVL|1|C1|C|2735
8PVL|1|C1|G|2736
8PVL|1|C1|A|2737
8PVL|1|C1|A|2738
8PVL|1|C1|A|2739
8PVL|1|C1|U|2740
8PVL|1|C1|U|2741
8PVL|1|C1|U|2742
8PVL|1|C1|G|2743
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Li
- 60S ribosomal protein L36
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