HL_8PVL_063

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UU(OMG)UUCA

Length

7 nucleotides

Bulged bases

8PVL|1|C1|U|2882, 8PVL|1|C1|U|2883

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PVL_063 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2208

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8PVL|1|C1|U|2879
8PVL|1|C1|U|2880
8PVL|1|C1|OMG|2881
8PVL|1|C1|U|2882
8PVL|1|C1|U|2883
8PVL|1|C1|C|2884
8PVL|1|C1|A|2885

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain Cd

Nucleolar GTP-binding protein 2

Chain LB

60S ribosomal protein L3-like protein