HL_8Q4F_021

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAACGC

Length

8 nucleotides

Bulged bases

8Q4F|1|A|A|968, 8Q4F|1|A|G|971

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1446

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8Q4F|1|A|G|963
8Q4F|1|A|A|964
8Q4F|1|A|U|965
8Q4F|1|A|A|968
8Q4F|1|A|A|969
8Q4F|1|A|C|970
8Q4F|1|A|G|971
8Q4F|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10