HL_8Q4F_024

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8Q4F|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1857

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8Q4F|1|A|G|1089
8Q4F|1|A|U|1090
8Q4F|1|A|U|1091
8Q4F|1|A|A|1092
8Q4F|1|A|A|1093
8Q4F|1|A|G|1094
8Q4F|1|A|U|1095
8Q4F|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS7

Chain U

Small ribosomal subunit protein bS21