HL_8Q4F_025

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCGGCC

Length

8 nucleotides

Bulged bases

8Q4F|1|A|C|1137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_025 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2641

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8Q4F|1|A|G|1134
8Q4F|1|A|U|1135
8Q4F|1|A|C|1136
8Q4F|1|A|C|1137
8Q4F|1|A|G|1138
8Q4F|1|A|G|1139
8Q4F|1|A|C|1140
8Q4F|1|A|C|1141

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9