HL_8Q4F_043

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8Q4F|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_043 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1851

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8Q4F|1|a|C|305
8Q4F|1|a|U|306
8Q4F|1|a|G|307
8Q4F|1|a|G|308
8Q4F|1|a|A|309
8Q4F|1|a|A|310
8Q4F|1|a|A|311
8Q4F|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24