HL_8Q4F_050

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8Q4F|1|a|U|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_050 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3518

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8Q4F|1|a|C|544
8Q4F|1|a|U|545
8Q4F|1|a|U|546
8Q4F|1|a|A|547
8Q4F|1|a|G|548
8Q4F|1|a|G|549

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL21