HL_8Q4F_058

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8Q4F|1|a|U|827, 8Q4F|1|a|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_058 not in the Motif Atlas

Homologous match to HL_8VTW_024

Geometric discrepancy: 0.1082

The information below is about HL_8VTW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8Q4F|1|a|U|826
8Q4F|1|a|U|827
8Q4F|1|a|U|828
8Q4F|1|a|A|829
8Q4F|1|a|G|830
8Q4F|1|a|G|831

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15