HL_8Q4F_072

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

8Q4F|1|a|A|1614, 8Q4F|1|a|A|1616

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_072 not in the Motif Atlas

Homologous match to HL_8VTW_039

Geometric discrepancy: 0.1252

The information below is about HL_8VTW_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8Q4F|1|a|C|1612
8Q4F|1|a|G|1613
8Q4F|1|a|A|1614
8Q4F|1|a|C|1615
8Q4F|1|a|A|1616
8Q4F|1|a|C|1617
8Q4F|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34