Motif HL_56817.1 Version HL_56817.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_041 | 8C3A | 0.2715 | 3 | 1 | LSU rRNA | C | 1840 | G | 1841 | A | 1843 | C | 1845 | G | 1847 | cWW |
| 2 | HL_5TBW_041 | 5TBW | 0.2668 | 3 | 1 | LSU rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 3 | HL_7A0S_040 | 7A0S | 0.1107 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
| 4 | HL_4WF9_038 | 4WF9 | 0.1054 | 3 | X | LSU rRNA | C | 1656 | G | 1657 | C | 1659 | C | 1661 | G | 1663 | cWW |
| 5 | HL_5J7L_173 | 5J7L | 0.0699 | 3 | DA | LSU rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 6 | HL_8VTW_039 | 8VTW | 0.0000 | 3 | 1A | LSU rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 7 | HL_4V9F_042 | 4V9F | 0.1250 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 8 | HL_1S03_001 | 1S03 | 0.5531 | 3 | A | 47-MER | A | 22 | G | 23 | A | 26 | A | 27 | U | 29 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACACAG | 4 |
| CGCAGCAG | 2 |
| CGACACG | 1 |
| AGGCAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACACA | 4 |
| GCAGCA | 2 |
| GACAC(6MZ) | 1 |
| GGCAAU | 1 |
- Annotations
-
- (8)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.27 | Max 0.69
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