3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCGCAAGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Q4F_079 not in the Motif Atlas
Geometric match to HL_3RG5_006
Geometric discrepancy: 0.3337
The information below is about HL_3RG5_006
Detailed Annotation
tRNA anticodon loop
Broad Annotation
tRNA anticodon loop
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8Q4F|1|a|G|1867
8Q4F|1|a|C|1868
8Q4F|1|a|G|1869
8Q4F|1|a|C|1870
8Q4F|1|a|A|1871
8Q4F|1|a|A|1872
8Q4F|1|a|G|1873
8Q4F|1|a|C|1874

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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