HL_8Q4F_080

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8Q4F|1|a|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_080 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2032

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8Q4F|1|a|G|1910
8Q4F|1|a|U|1911
8Q4F|1|a|A|1912
8Q4F|1|a|A|1913
8Q4F|1|a|C|1914
8Q4F|1|a|U|1915
8Q4F|1|a|A|1916
8Q4F|1|a|U|1917
8Q4F|1|a|A|1918
8Q4F|1|a|A|1919
8Q4F|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA