HL_8Q4F_117

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_117 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1321

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8Q4F|1|A|A|320
8Q4F|1|A|A|321
8Q4F|1|A|C|322
8Q4F|1|A|U|323
8Q4F|1|A|G|324
8Q4F|1|A|A|325
8Q4F|1|A|G|326
8Q4F|1|A|A|327
8Q4F|1|A|C|328
8Q4F|1|A|A|329
8Q4F|1|A|C|330
8Q4F|1|A|G|331
8Q4F|1|A|G|332
8Q4F|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20