HL_8Q4F_120

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8Q4F|1|a|G|2751, 8Q4F|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q4F_120 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1712

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8Q4F|1|a|C|2745
8Q4F|1|a|U|2746
8Q4F|1|a|G|2747
8Q4F|1|a|A|2748
8Q4F|1|a|A|2749
8Q4F|1|a|A|2750
8Q4F|1|a|G|2751
8Q4F|1|a|C|2752
8Q4F|1|a|A|2753
8Q4F|1|a|U|2754
8Q4F|1|a|C|2755
8Q4F|1|a|U|2756
8Q4F|1|a|A|2757
8Q4F|1|a|A|2758
8Q4F|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6