HL_8Q5I_012

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GCUUCUGC

Length

8 nucleotides

Bulged bases

8Q5I|1|1|U|542, 8Q5I|1|1|C|543, 8Q5I|1|1|U|544, 8Q5I|1|1|G|545

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_012 not in the Motif Atlas

Homologous match to HL_8C3A_012

Geometric discrepancy: 0.2328

The information below is about HL_8C3A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8Q5I|1|1|G|539
8Q5I|1|1|C|540
8Q5I|1|1|U|541
8Q5I|1|1|U|542
8Q5I|1|1|C|543
8Q5I|1|1|U|544
8Q5I|1|1|G|545
8Q5I|1|1|C|546

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 0

60S ribosomal protein L20

Chain q

60S ribosomal protein L9-B

Chain u

60S ribosomal protein L14-B