HL_8Q5I_025
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Q5I_025 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.0617
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8Q5I|1|1|G|1144
8Q5I|1|1|G|1145
8Q5I|1|1|A|1146
8Q5I|1|1|U|1147
8Q5I|1|1|G|1148
8Q5I|1|1|A|1149
8Q5I|1|1|A|1150
8Q5I|1|1|C|1151
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L32
- Chain AG
- 60S ribosomal protein L33-A
- Chain o
- 60S ribosomal protein L7-A
Coloring options: