HL_8Q5I_029

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8Q5I|1|1|G|1503, 8Q5I|1|1|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_029 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0744

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8Q5I|1|1|A|1502
8Q5I|1|1|G|1503
8Q5I|1|1|C|1504
8Q5I|1|1|A|1505
8Q5I|1|1|G|1506
8Q5I|1|1|U|1507
8Q5I|1|1|U|1508

Current chains

Chain 1

25S rRNA

Nearby chains

Chain x

Ribosomal protein L22

Chain z

60S ribosomal protein L19-A