HL_8Q5I_050

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGUCAAAC

Length

8 nucleotides

Bulged bases

8Q5I|1|1|C|2517

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_050 not in the Motif Atlas

Homologous match to HL_8C3A_053

Geometric discrepancy: 0.163

The information below is about HL_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19906.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8Q5I|1|1|G|2514
8Q5I|1|1|G|2515
8Q5I|1|1|U|2516
8Q5I|1|1|C|2517
8Q5I|1|1|A|2518
8Q5I|1|1|A|2519
8Q5I|1|1|A|2520
8Q5I|1|1|C|2521

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

40S ribosomal protein S1

Chain p

60S ribosomal protein L8