HL_8Q5I_060

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8Q5I|1|1|G|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_060 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0663

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8Q5I|1|1|A|2869
8Q5I|1|1|G|2870
8Q5I|1|1|C|2871
8Q5I|1|1|A|2872
8Q5I|1|1|G|2873
8Q5I|1|1|A|2874
8Q5I|1|1|A|2875
8Q5I|1|1|U|2876

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L40-B

Chain q

60S ribosomal protein L9-B