HL_8Q5I_067

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_067 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.0707

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8Q5I|1|1|C|3205
8Q5I|1|1|G|3206
8Q5I|1|1|G|3207
8Q5I|1|1|A|3208
8Q5I|1|1|A|3209
8Q5I|1|1|A|3210
8Q5I|1|1|G|3211
8Q5I|1|1|G|3212

Current chains

Chain 1

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain w

Ribosomal protein L13