HL_8Q5I_081

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8Q5I|1|A|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_081 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0403

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8Q5I|1|A|G|328
8Q5I|1|A|A|329
8Q5I|1|A|U|330
8Q5I|1|A|A|331
8Q5I|1|A|G|332
8Q5I|1|A|U|333
8Q5I|1|A|G|334
8Q5I|1|A|G|335
8Q5I|1|A|C|336

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain M

40S ribosomal protein S11A