HL_8Q5I_087

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_087 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.052

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8Q5I|1|A|C|567
8Q5I|1|A|A|568
8Q5I|1|A|G|569
8Q5I|1|A|C|570
8Q5I|1|A|C|571
8Q5I|1|A|G|572

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein S23 (S12)