HL_8Q5I_094

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_094 not in the Motif Atlas

Homologous match to HL_8C3A_215

Geometric discrepancy: 0.0437

The information below is about HL_8C3A_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8Q5I|1|A|A|1069
8Q5I|1|A|G|1070
8Q5I|1|A|A|1071
8Q5I|1|A|A|1072
8Q5I|1|A|A|1073
8Q5I|1|A|U|1074

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein S5

Chain X

40S ribosomal protein S22-A

Chain b

40S ribosomal protein S26