HL_8Q5I_101

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Q5I_101 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.0909

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8Q5I|1|A|U|1382
8Q5I|1|A|U|1383
8Q5I|1|A|U|1384
8Q5I|1|A|C|1385
8Q5I|1|A|A|1386
8Q5I|1|A|A|1387
8Q5I|1|A|G|1388

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S17-B

Chain d

40S ribosomal protein S28-B