HL_8Q5I_109
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UGAAUUGCAGAUAUUCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8Q5I|1|4|U|80, 8Q5I|1|4|C|84, 8Q5I|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Q5I_109 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.0889
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8Q5I|1|4|U|69
8Q5I|1|4|G|70
8Q5I|1|4|A|71
8Q5I|1|4|A|72
8Q5I|1|4|U|73
8Q5I|1|4|U|74
8Q5I|1|4|G|75
8Q5I|1|4|C|76
8Q5I|1|4|A|77
8Q5I|1|4|G|78
8Q5I|1|4|A|79
8Q5I|1|4|U|80
8Q5I|1|4|A|81
8Q5I|1|4|U|82
8Q5I|1|4|U|83
8Q5I|1|4|C|84
8Q5I|1|4|G|85
8Q5I|1|4|U|86
8Q5I|1|4|G|87
8Q5I|1|4|A|88
8Q5I|1|4|A|89
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Ribosomal protein L24
- Chain AI
- Ribosomal protein L29
- Chain AK
- 60S ribosomal protein L37-B
- Chain AM
- 60S ribosomal protein L39
Coloring options: