HL_8QBT_007

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUCAGCUGGGAGAG

Length

14 nucleotides

Bulged bases

8QBT|1|7|G|18, 8QBT|1|7|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_007 not in the Motif Atlas

Homologous match to HL_4WT8_218

Geometric discrepancy: 0.4547

The information below is about HL_4WT8_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QBT|1|7|C|11
8QBT|1|7|U|12
8QBT|1|7|C|13
8QBT|1|7|A|14
8QBT|1|7|G|15
8QBT|1|7|C|16
8QBT|1|7|U|17
8QBT|1|7|G|18
8QBT|1|7|G|19
8QBT|1|7|G|20
8QBT|1|7|A|21
8QBT|1|7|G|22
8QBT|1|7|A|23
8QBT|1|7|G|24

Current chains

Chain 7

Ala-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA