HL_8QBT_025

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8QBT|1|A|U|546, 8QBT|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_025 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.2663

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QBT|1|A|G|543
8QBT|1|A|C|544
8QBT|1|A|U|545
8QBT|1|A|U|546
8QBT|1|A|A|547
8QBT|1|A|G|548
8QBT|1|A|G|549
8QBT|1|A|C|550

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21