HL_8QBT_046

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8QBT|1|A|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_046 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.2564

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8QBT|1|A|C|1533
8QBT|1|A|U|1534
8QBT|1|A|A|1535
8QBT|1|A|C|1536
8QBT|1|A|G|1537
8QBT|1|A|G|1538

Current chains

Chain A

23S rRNA

Nearby chains