HL_8QBT_059

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

8QBT|1|A|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_059 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3212

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8QBT|1|A|C|2143
8QBT|1|A|G|2144
8QBT|1|A|C|2145
8QBT|1|A|C|2146
8QBT|1|A|A|2147
8QBT|1|A|G|2148

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain s

30S ribosomal protein S11