HL_8QBT_085

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8QBT|1|i|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_085 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1124

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8QBT|1|i|G|259
8QBT|1|i|G|260
8QBT|1|i|U|261
8QBT|1|i|A|262
8QBT|1|i|A|263
8QBT|1|i|C|264
8QBT|1|i|G|265
8QBT|1|i|G|266
8QBT|1|i|C|267

Current chains

Chain i

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20

Chain y

Small ribosomal subunit protein uS17